{"id":29,"date":"2015-05-16T16:16:25","date_gmt":"2015-05-16T16:16:25","guid":{"rendered":"http:\/\/blogit.itu.dk\/evoblissproject\/?page_id=29"},"modified":"2018-03-22T14:22:19","modified_gmt":"2018-03-22T14:22:19","slug":"publications","status":"publish","type":"page","link":"https:\/\/blogit.itu.dk\/evoblissproject\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"
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Journal papers<\/h3>\n

Mari Yoshida, Trevor Hinkley, Soichiro Tsuda, Yousef M. Abul-Haija, Roy T. McBurney, Vladislav Kulikov, Jennifer S. Mathieson, Sabrina Gali\u00f1anes Reyes, Maria D. Castro, Leroy Cronin<\/strong> (2018) Using Evolutionary Algorithms and Machine Learning to Explore Sequence Space for the Discovery of Antimicrobial Peptides<\/a>, vol. 4, issue 3, pp. 533-543, doi:10.1016\/j.chempr.2018.01.005<\/a>.<\/span><\/p>\n

Laurie J. Points<\/strong>, James Ward Taylor, Jonathan Grizou<\/strong>, Kevin Donkers, and Leroy Cronin<\/strong> (2018) Artificial intelligence exploration of unstable protocells leads to predictable properties and discovery of collective behavior<\/a>, PNAS 115 <\/span>(5), pp. <\/span>885-890, doi:10.1073\/pnas.1711089115<\/a>.<\/span><\/p>\n

Nejatimoharrami, F., Faina, A., & Stoy, K.<\/strong> (2017). New Capabilities of EvoBot: A Modular, Open-Source Liquid-Handling Robot. <\/a>SLAS TECHNOLOGY: Translating Life Sciences Innovation, 22(5):500-506. <\/p>\n

Ieropoulos, I., Theodosiou, P., Taylor, B.,<\/strong> Greenman, J., & Melhuish, C. (2017) Gelatin as a promising printable feedstock for microbial fuel cells (MFC)<\/a>. International Journal of Hydrogen Energy<\/em>, 42(3), 1783\u20131790 http:\/\/doi.org\/10.1016\/j.ijhydene.2016.11.083<\/a><\/u><\/em><\/p>\n

Wagner M. and Horn H.<\/strong> (2017) Optical Coherence Tomography in Biofilm Research: A Comprehensive Review<\/a>, Biotechnology and Bioengineering<\/em>, vol. 114, issue 7, pp. 1386-1402., doi: 10.1002\/bit.26283<\/a><\/p>\n

Juan Manuel Parrilla-Gutierrez<\/strong>, Soichiro Tsuda, Jonathan Grizou, James Taylor, Alon Henson <\/strong>& Leroy Cronin<\/strong> (2017) Adaptive artificial evolution of droplet protocells in a 3D-printed fluidic chemorobotic platform with configurable environments<\/a>, Nature Communications<\/em> 8, article number 1144.<\/p>\n

Taylor, J. W, Eghtesadi, S. A., Points, L. J., Liu, T., Cronin, L.<\/strong> (2017) Autonomous model protocell division driven by molecular replication<\/a>, Nature Communications 8, article number 237.<\/p>\n

Stuart M. Marshall, Alastair R. G. Murray, Leroy Cronin<\/strong> (2017) A probabilistic framework for identifying biosignatures using Pathway Complexity<\/a>, Philosophical transaction of the Royal Society, vol. 375, issue 2109.<\/p>\n

David Doran, Marc Rodriguez-Garcia, Rebecca Turk-MacLeod, Geoffrey J. T. Cooper and Leroy Cronin<\/strong> (2017) A recursive microfluidic platform to explore the emergence of chemical evolution<\/a>, Beilstein J. Organic Chemistry, 7, pp. 1702-1709.<\/p>\n

 Vasilios Duros, Jonathan Grizou<\/strong>, Weimin Xuan Zied Hosni, De\u2010Liang Long, Haralampos N. Miras, Leroy Cronin<\/strong> (2017) Human versus Robots in the Discovery and Crystallization of Gigantic Polyoxometalates<\/a>, Angewandte Chemie, vol. 56, issue 36, pp. 10815-10820.<\/p>\n

Mari Yoshida, Sabrina Gali\u00f1anes Reyes, Soichiro Tsuda, Takaaki Horinouchi, Chikara Furusawa, and Leroy Cronin<\/strong> (2017) Time-programmable drug dosing allows the manipulation, suppression and reversal of antibiotic drug resistance in vitro<\/a>, Nature Communications 8, article  number15589.<\/p>\n

Salar-Garc\u00eda, M. J., Gajda, I., Ortiz-Mart\u00ednez, V. M., Greenman, J., Hanczyc, M. M.<\/strong>, de los R\u00edos, A. P., & Ieropoulos, I. A<\/strong>. (2016) Microalgae as substrate in low cost terracotta-based microbial fuel cells: novel application of the catholyte produced<\/a>. Bioresource Technology, 2019, pp.380-385<\/span>.
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Cejkova J.<\/strong>, Stepanek F., Hanczyc M.M.<\/strong> (2016) . Evaporation-induced pattern formation of decanol droplets. Langmuir, DOI: 10.1021\/acs.langmuir.6b01062<\/a><\/p>\n

Victor Sans and Leroy Cronin<\/strong> (2016) Towards dial-a-molecule by integrating continuous flow, analytics and self-optimisation<\/a>, Chemical Society Reviews<\/em>.<\/p>\n

Tsuda S., Jaffery H., Doran D., Hezwani M., Robbins P. J., Yoshida M., Cronin L.<\/strong> (2015). Customizable 3D Printed \u2018Plug and Play\u2019Millifluidic Devices for Programmable Fluidics. PloS one<\/i>, 10<\/i>(11), e0141640.<\/a><\/p>\n

Henson A.<\/strong>, Parrilla Gutierrez J. M., Hinkley T., Tsuda S., Cronin L.<\/strong> (2015). Towards heterotic computing with droplets in a fully automated droplet-maker platform,<\/em> Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 373(2046), 20140221.<\/a><\/p>\n

Blauert F., Horn H., Wagner M.<\/strong> (2015). Time-resolved Biofilm Deformation Measurements using Optical Coherence Tomography<\/a>, <\/em>Biotechnology and Bioengineering 112 (9), pp. 1893-1905, doi: 10.1002\/bit.25590\/abstract<\/a><\/span>.<\/p>\n

Hanczyc M. M.<\/strong>, Parrilla J. M., Nicholson A., Yanev K., Stoy K.<\/strong> (2015). Creating and maintaining chemical artificial life by robotic symbiosis<\/em>.  Artificial Life 21, 47-57.<\/a><\/p>\n

Gutierrez J. M. P., Hinkley T., Taylor J. W., Yanev K., Cronin L.<\/strong> (2014). Evolution of oil droplets in a chemorobotic platform.<\/em> Nature communications, 5, 5571.<\/a><\/p>\n

Hanczyc M.M.<\/strong> (2014). Droplets: Unconventional Protocell Model with Life-Like Dynamics and Room to Grow. <\/em> Life 4<\/em>, 1038-1049.<\/a><\/p>\n

Cejkova J.<\/strong>, Novak M., Stepanek F., Hanczyc M.<\/strong> (2014). Dynamics of chemotactic droplets in salt concentration gradients<\/em>, Langmuir 30, 11937\u201311944<\/a><\/p>\n<\/div>\n<\/div>\n

Conference papers<\/h3>\n

Farzad Nejatimoharrami, Andres Faina, Kasper Stoy<\/strong> (2018) A Low-Cost Open-Source Cloud-based Liquid Handling Robotic Platform for Performing Remote Real-Time Collaborative Experiments<\/a>, Seventh Annual International SLAS (Society for Laboratory Automation and Screening) Conference (SLAS 2018), San Diego. USA.<\/p>\n

Nejatimoharrami, F., Faina, A., & St\u00f8y, K.<\/strong> (2017). A Low Cost Standalone Open-Source Robotic Platform for Performing Feedback based Liquid Handling Experiments<\/a>. In 2017 Society for Lab Automation and Screening International Conference & Exhibition.<\/p>\n

Nejatimoharrami, F., Faina, A.<\/strong>, Jovanovic, A., St-Cyr, O., Chignell, M., & Stoy, K.<\/strong> (2017). UI Design for an Engineering Process: Programming Experiments on a Liquid Handling Robot<\/a>. In Robotic Computing (IRC), IEEE International Conference on (pp. 196-203). IEEE.<\/p>\n

Theodosiou P.<\/strong>, Greenman J., Melhuish, C., Ieropoulos, I.<\/strong> (2017). Towards monolithically printed MFCs: A report on the development of a 3D-printable membrane electrode assembly (MEA)<\/a>,<\/em> European Fuel Cell Technology & Applications Conference \u2013 Piero Lunghi Conference, December 12-15, 2017, Naples, Italy.<\/em> pp. 279-280.<\/em><\/p>\n

Theodosiou, P., Faina, A., Nejatimoharrami, F., Stoy, K<\/strong>., Greenman, J., Melhuish, C., & Ieropoulos, I.<\/strong> (2017). EvoBot: Towards a Robot-Chemostat for Culturing and Maintaining Microbial Fuel Cells (MFCs).<\/a> In M. Mangan, M. Cutkosky, A. Mura, P. F. M. J. Verschure, T. Prescott, & N. Lepora (Eds.), Biomimetic and Biohybrid Systems: 6th International Conference, Living Machines 2017, Stanford, CA, USA, July 26–28, 2017, Proceedings (pp. 453\u2013464). Cham: Springer International Publishing.<\/p>\n

Laurie J. Points, Juan Manuel Parrilla Gutierrez, Jonathan Grizou,<\/strong> James Ward Taylor, and Leroy Cronin<\/strong> (2017) The Evolution of Active Droplets in Chemorobotic Platforms<\/a>, Proceedings of the ECAL 2017, pp. 356-357.<\/p>\n

Nejatimoharrami F., Faina A., Cejkova J., Hanczyc M.M., Stoy K.<\/strong> (2016) Robotic Automation to Augment Quality of Artificial Chemical Life Experiments,<\/a> The Fifteenth International Conference on the Synthesis and Simulation of Living Systems (ALIFE XV) – Cancun, Mexico 4.-8.7.2016, pp.  634-635.
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Fai\u00f1a A., Nejatimoharrami F., Stoy K., Theodosiou P., Taylor B., Ieropoulos I.<\/strong> (2016) EvoBot: An Open-Source, Modular Liquid Handling Robot for Nurturing Microbial Fuel Cells<\/a>, The Fifteenth International Conference on the Synthesis and Simulation of Living Systems (ALIFE XV) – Cancun, Mexico 4.-8.7.2016, pp.  626-633.
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Cejkova J.<\/strong>, Svara D., Stepanek F., Hanczyc M.<\/strong> (2016). Novel type of pattern formation in droplet systems<\/a>, 43rd<\/sup> International Conference of SSCHE, Tatranske Matliare, Slovakia 23.-27.5.2016<\/em><\/p>\n

Janska P., Zadrazil A., Nejatimoharrami F.,  Fai\u00f1a A., Stoy K., Cejkova J.<\/strong>  (2016). Collective behaviour in droplet systems<\/a>, 43rd<\/sup> International Conference of SSCHE, Tatranske Matliare, Slovakia 23.-27.5.2016<\/em><\/p>\n

Nejatimoharrami F.,  Stoy K., Fai\u00f1a A.<\/strong> (2016) An Open-Source, Low-Cost Robot for Performing Reactive Liquid Handling Experiments<\/a>, International conference and exhibition of The Society for Laboratory Automation and Screening (SLAS2016), San Diego, 2016.<\/em><\/p>\n

Blauert F.<\/strong>, Pavissich J.P., Wagner M., Horn H.<\/strong>, Picioreanu C. (2016) Evaluation of biofilm mechanical properties using optical coherence tomography (OCT) and fluid-structure interaction simulations<\/a>, Proceedings of Biofilms 7th Conference<\/em>, ISBN 978-989-97478-7-6.<\/p>\n

Theodosiou P., Ieropoulos I., Taylor B.<\/strong>, Greenman J., Melhuish C. (2015). Gelatin as a promising printable nutrient feedstock for mirobial fuel cells<\/a>, European Fuel Cell Technology & Applications Conference – Piero Lunghi Conference, December 16-18, 2015, Naples, Italy.<\/em><\/p>\n

Blauert F.<\/span><\/strong>, Wagner M., Horn H.<\/strong> (2015) Time-lapsed Three-dimensional Biofilm Deformation in Situand Non-invasively Visualized and Quantified by Means of Optical Coherence Tomography<\/a>. 7<\/span>th <\/span>ASM Conference on Biofilms<\/span>, 24-29 September 2015, in Chicago, USA.<\/span><\/p>\n

Guti\u00e9rrez J.M.P. , Cronin L.<\/strong> (2015). Embodied Evolution of Artificial Cells in a Hybrid Wet\/Hard-ware Platform, ECAL 2015.<\/a><\/p>\n

Blauert F.<\/span><\/strong>, Horn H., Wagner M. <\/strong>(2014) A new attempt to measure biofilm rheology by optical coherence tomography<\/a>. <\/span>Biofilms 6<\/span>, 11-13 Mai 2014, in Vienna, Austria.<\/span><\/p>\n

Book chapters<\/h3>\n

\u010cejkov\u00e1 J.,<\/strong> Holler S., Quyen N. T., Kerrigan C., \u0160t\u011bp\u00e1nek F., Hanczyc M. M.<\/strong> Chemotaxis and chemokinesis of living and non-living objects<\/a>. Book chapter in Advances in Unconventional Computing, <\/em>(Adamatzky A., ed.), Springer, 2016.<\/p>\n

 <\/p>\n","protected":false},"excerpt":{"rendered":"

Journal papers Mari Yoshida, Trevor Hinkley, Soichiro Tsuda, Yousef M. Abul-Haija, Roy T. McBurney, Vladislav Kulikov, Jennifer S. Mathieson, Sabrina Gali\u00f1anes Reyes, Maria D. Castro, Leroy Cronin (2018) Using Evolutionary … Continue reading Publications<\/span> →<\/span><\/a><\/p>\n","protected":false},"author":52,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","meta":{"ngg_post_thumbnail":0,"footnotes":""},"class_list":["post-29","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/blogit.itu.dk\/evoblissproject\/wp-json\/wp\/v2\/pages\/29","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/blogit.itu.dk\/evoblissproject\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/blogit.itu.dk\/evoblissproject\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/blogit.itu.dk\/evoblissproject\/wp-json\/wp\/v2\/users\/52"}],"replies":[{"embeddable":true,"href":"https:\/\/blogit.itu.dk\/evoblissproject\/wp-json\/wp\/v2\/comments?post=29"}],"version-history":[{"count":76,"href":"https:\/\/blogit.itu.dk\/evoblissproject\/wp-json\/wp\/v2\/pages\/29\/revisions"}],"predecessor-version":[{"id":872,"href":"https:\/\/blogit.itu.dk\/evoblissproject\/wp-json\/wp\/v2\/pages\/29\/revisions\/872"}],"wp:attachment":[{"href":"https:\/\/blogit.itu.dk\/evoblissproject\/wp-json\/wp\/v2\/media?parent=29"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}